You can also select the Destination folder where the new files will be saved. Basic Export Options – OutputĪllows you to select the file Format (FCS3, CSV-Scale values or CSV-Channel values) from a drop down list. This will bring up a bring up the following Export or Concatenate window. Select either Export/Concatenate Populations or Export/Concatenate Group, as appropriate, from the drop down list. Next, within the Document band of the workspace ribbon (located by default within the File tab), click on the Data Export/Concatenate action button. To export a particular gated population, highlight the gated subset within a gating tree (either by group or individual samples). To export individual samples within a group, highlight one or more samples in the Samples window (e.g. To export all files within a group, highlight the appropriate group within the Group window. Exporting Data as a new FCS or CSV file.Įxporting can be performed either at the level of a group or individual samples, exporting all events or individual gated populations. To learn about exporting data from the Layout Editor, click here. To learn about exporting data from the Table Editor, click here. To learn about exporting directly from the Graph Window, click here. To learn about saving Workspace (WSP), Workspace Template (WSPT), Archival Cytometry Standard (ACS), or Excel (XLS) files, click here. The following section describes how to export data as FCS or CSV files directly from the workspace using the Export/Concatenate options located within the Document band of actions. For example, you may need to create a new FCS file by merging multiple files together (concatenate) to facilitate rare event analysis, or export CSV files that include your workspace structure (gating tree and columns) for use in a downstream application. For more information on the Workspace click here.Export or Concatenate Sample Data Exporting data from FlowJo is helpful for a variety of tasks. Through using modifier keys like shift/ctrl, alt (option on macs), and cmd (for macs), as well as the right-click menu, you can often find shortcuts to context-specific functionality to aid your workflow. Many actions in FlowJo have been assigned shortcuts. FlowJo software is complex, and analysis can often be accelerated by adopting the use of keyboard shortcuts.
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